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[ BioInformatics ] Databases ] Scientific Journals ]

 

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Bioinformatics contains links to databases that contain raw information.

Database Searching

National center for Biotechnology Information (NCBI)
Entrez Home  http://www.ncbi.nlm.nih.gov/Entrez/
Entrez Help  http://www.ncbi.nlm.nih.gov/Entrez/entrezhelp.html
European BioInformatics Institute (EBI)
Sequence Retrieval System (SRS)  http://srs.ebi.ac.uk/
SRS Help  http://srs.ebi.ac.uk/srs5/man/mi_srswww.html
GenomeNet (Kyoto University and University of Tokyo)
DBGET  http://www.genome.ad.jp/dbget/dbget2.html
DBGET Help  http://www.genome.ad.jp/dbget/dbget_manual.html
BLAST
http://www.ncbi.nlm.nih.gov/BLAST/
ftp://ncbi.nlm.nih.gov/blast/
Fasta3 Database Searches at the EBI
http://www2.ebi.ac.uk/fasta3/
ftp://ftp.virginia.edu/pub/fasta
Sequence Search Site
http://sss.stanford.edu/sss/

Multiple Sequence Alignment, Sequence Searches, Sequence Analysis

NCBI BLAST 2.0 Server
http://www.ncbi.nlm.nih.gov/cgi-bin/BLAST/nph-newblast?Jform=1
NCBI PSI-BLAST Server
http://www.ncbi.nlm.nih.gov/cgi-bin/BLAST/nph-psi_blast
Washington University BLAST Software
http://blast.wustl.edu/
ClustalW Software
ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalW/
ClustalX Software
ftp://ftp-igbmc.u-strasbg.fr/pub/ClustalX/
HMMER 2.1.1 Profile hidden Markov models for biological sequence analysis
http://hmmer.wustl.edu/
Nucleotide Sequence Analysis at the Sanger Centre, Computational Genome Group
http://genomic.sanger.ac.uk/gf/gf.shtml

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Last modified: November 27, 1999